[1]:

import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
%matplotlib inline
from IPython.display import Image


from tyssue import config, Sheet, SheetGeometry, History, EventManager
from tyssue.draw import sheet_view
from tyssue.generation import three_faces_sheet
from tyssue.draw.plt_draw import plot_forces

from tyssue.dynamics import PlanarModel

from tyssue.solvers.viscous import EulerSolver
from tyssue.draw.plt_draw import create_gif


geom  = SheetGeometry
model = PlanarModel

This notebooks demonstrates usage of the time dependant solver EulerSolver in the simplest case where we solve

\[\eta_i \frac{d\mathbf{r}_i}{dt} = \mathbf{F}_i = - \mathbf{\nabla}_i E\]

The model is defined in the same way it is defined for the quasistatic solver.

Simple forward Euler solver¶

\[\mathbf{r}_i(t+dt) = \mathbf{r}_i(t) + \frac{\mathbf{F}_i(t)}{\eta} dt\]

[2]:

sheet = Sheet('3', *three_faces_sheet())
geom.update_all(sheet)
sheet.settings['threshold_length'] = 1e-3

sheet.update_specs(config.dynamics.quasistatic_plane_spec())
sheet.face_df["prefered_area"] = sheet.face_df["area"].mean()
history = History(sheet, extra_cols={"edge":["dx", "dy"]})

sheet.vert_df['viscosity'] = 1.0
sheet.edge_df.loc[[0, 17],  'line_tension'] *= 4

fig, ax = plot_forces(sheet, geom, model, ['x', 'y'], 1)

/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))

../_images/notebooks_SimpleTimeDependent_3_1.png

Solver instanciation

[3]:

solver = EulerSolver(
    sheet,
    geom,
    model,
    history=history,
    auto_reconnect=True)

The solver’s solve method accepts a on_topo_change function as argument. This function is executed each time a topology change occurs. Here, we reste the line tension to its original value.

[4]:

def on_topo_change(sheet):
    print("reseting tension")
    sheet.edge_df["line_tension"] = sheet.specs["edge"]["line_tension"]

Solving from \(t = 0\) to \(t = 8\)¶

[5]:

res = solver.solve(tf=8, dt=0.05, on_topo_change=on_topo_change,
                   topo_change_args=(solver.eptm,))

/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))

reseting tension

/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))

reseting tension

/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))
/home/docs/checkouts/readthedocs.org/user_builds/tyssue/conda/stable/lib/python3.7/site-packages/tyssue/utils/utils.py:35: FutureWarning: Support for multi-dimensional indexing (e.g. `obj[:, None]`) is deprecated and will be removed in a future version.  Convert to a numpy array before indexing instead.
  df_nd = df[:, None]#np.asarray(df).repeat(ndim).reshape((df.size, ndim))

Showing the results¶

[6]:

create_gif(solver.history, "sheet3.gif")

[7]:

Image("sheet3.gif")

[7]:

<IPython.core.display.Image object>

[ ]:

Simple forward Euler solver¶

Solving from \(t = 0\) to \(t = 8\)¶

Showing the results¶

Tyssue

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