tyssue.behaviors.monolayer package¶
Submodules¶
tyssue.behaviors.monolayer.actions module¶
Basic monolayer event module¶
-
tyssue.behaviors.monolayer.actions.
ab_pull
(monolayer, cell, radial_tension, distributed=False)[source]¶ Adds a linear tension to the apical-to-basal edges of a cell
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tyssue.behaviors.monolayer.actions.
ab_pull_edge
(monolayer, cell_edges, radial_tension, distributed=False)[source]¶ Adds a linear tension to the apical-to-basal edges of a cell
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tyssue.behaviors.monolayer.actions.
contract
(monolayer, face, contractile_increase, multiply=False, contraction_column='contractility')[source]¶ Contract the face by increasing the ‘contractility’ parameter by contractile_increase
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tyssue.behaviors.monolayer.actions.
contract_apical_face
(monolayer, face_id, contractile_increase=1.0, critical_area=0.01, max_contractility=50, multiply=False, contraction_column='contractility')[source]¶ Single step contraction event for apical face only
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tyssue.behaviors.monolayer.actions.
grow
(monolayer, cell, grow_rate)[source]¶ Multiplies the equilibrium volume of face by a factor (1+shrink_rate)
tyssue.behaviors.monolayer.apoptosis_events module¶
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tyssue.behaviors.monolayer.apoptosis_events.
apoptosis
(monolayer, manager, **kwargs)[source]¶ Apoptotic behavior
- Parameters
monolayer (a :cass:`Monolayer` object) –
manager (a
EventManager
object) –Parameters (Optional) –
------------------- –
cell_id (int) – id of the apoptotic cell
contract_rate (float, default 2.) –
critical_area (float, default 1e-2,) –
shrink_rate (float, default 0.4,) –
critical_volume (float, default 0.1,) –
tyssue.behaviors.monolayer.basic_events module¶
tyssue.behaviors.monolayer.delamination_events module¶
-
tyssue.behaviors.monolayer.delamination_events.
constriction
(monolayer, manager, **kwargs)[source]¶ Constriction behavior
- Parameters
monolayer (a :cass:`Monolayer` object) –
manager (a
EventManager
object) –
Module contents¶
Monolayer related behaviors
For now only apoptosis is defined, as a sequence of actions leading to the cell disapearing from a monolayer