tyssue.io package

Submodules

tyssue.io.csv module

tyssue.io.csv.write_storm_csv(filename, points, coords=['x', 'y', 'z'], split_by=None, **csv_args)

Saves a point cloud array in the storm format

tyssue.io.hdf5 module

tyssue.io.hdf5.load_datasets(h5store, data_names=['face', 'vert', 'edge', 'cell', 'settings'])

tyssue.io.hdf5.save_datasets(h5store, eptm)

tyssue.io.obj module

tyssue.io.obj.save_junction_mesh(filename, eptm)

tyssue.io.obj.save_splitted_cells(fname, sheet, epsilon=0.1)

tyssue.io.obj.save_triangulated(filename, eptm)

tyssue.io.obj.write_splitted_cells(*args, **kwargs)

Module contents

Input/Output module.

Supported formats:

hdf5, csv

tyssue.io.get_sim_dir()

Returns the path to the root simulation directory as a pathlib.Path object

The simulation directory is stored in the ‘TYSSUE_SIM_DIR’ environement variable.