Welcome to Tyssue’s documentation!

The tyssue library seeks to provide a unified interface to implement bio-mechanical models of living tissues, with a focus on epithelium modeling. It’s main focus is on vertex based models.

• Core objects
  • The Epithelium object
  • Sheet object
  • Monolayer object
• Drawing functions
  • Matplotlib based
  • Ipyvolume based
• Geometry classes
  • Planar
  • Sheet (2D 1/2)
  • Bulk (3D)
• Topology functions
  • Base
  • Sheet
  • Bulk and Monolayer
• Dynamic models definitions
  • Gradients
  • Effectors and Model factory
  • Predefined models
  • Quasistatic solver
• Epithelium generation utilities
  • Hexagonal grids
• Input/output
  • Predefined datasets
• Collision detection and correction
  • Detection
  • Resolution
• Miscellanous utils
  • Decorators

Indices and tables

• Index

• Module Index

• Search Page