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tyssue.config.dynamics package

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tyssue.config.dynamics package#

Module contents#

tyssue.config.dynamics.quasistatic_bulk_spec()[source]#
tyssue.config.dynamics.quasistatic_plane_spec()[source]#

Default specification for the dynamics of a sheet vertex model - also suitable for general faceted tissue

{
"face": {
    "contractility": 0.04,
    "vol_elasticity": 1.0,
    "prefered_height": 10.0,
    "prefered_area": 24.0,
    "prefered_vol": 0.0
    },
"vert": {
     "radial_tension": 0.0
     },
"edge": {
     "is_active": 1,
     "line_tension": 0.12
     },
"settings": {
    "grad_norm_factor": 1.0,
    "nrj_norm_factor": 1.0
    }
}
tyssue.config.dynamics.quasistatic_sheet_spec()[source]#

Default specification for the dynamics of a sheet vertex model - also suitable for general faceted tissue

{
"face": {
    "contractility": 0.04,
    "vol_elasticity": 1.0,
    "prefered_height": 10.0,
    "prefered_area": 24.0,
    "prefered_vol": 0.0
    },
"vert": {
     "radial_tension": 0.0
     },
"edge": {
     "line_tension": 0.12
     },
"settings": {
    "grad_norm_factor": 1.0,
    "nrj_norm_factor": 1.0
    }
}
tyssue.config.dynamics.quasistatic_sheet_spec_anchors()[source]#

Default specification for the dynamics of a sheet vertex model with anchor vertices

{
"face": {
    "contractility": 0.04,
    "vol_elasticity": 1.0,
    "prefered_height": 10.0,
    "prefered_area": 24.0,
    "prefered_vol": 0.0
    },
"vert": {
    "radial_tension": 0.0,
    "at_border": 0,
    "is_anchor": 0
     },
"edge": {
    "anchor_elasticity": 0.0,
    "line_tension": 0.12,
    "at_border": 0,
    "is_anchor": 0
     },
"settings": {
    "grad_norm_factor": 1.0,
    "nrj_norm_factor": 1.0
    }
}
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