tyssue.behaviors package

Subpackages

• tyssue.behaviors.monolayer package
  • Submodules
  • tyssue.behaviors.monolayer.actions module
    • Basic monolayer event module
  • tyssue.behaviors.monolayer.apoptosis_events module
  • tyssue.behaviors.monolayer.basic_events module
    • Small event module
  • tyssue.behaviors.monolayer.delamination_events module
  • Module contents
• tyssue.behaviors.sheet package
  • Submodules
  • tyssue.behaviors.sheet.actions module
    • Basic event module
  • tyssue.behaviors.sheet.apoptosis_events module
    • Apoptosis event module
  • tyssue.behaviors.sheet.basic_events module
    • Small event module
  • tyssue.behaviors.sheet.delamination_events module
    • Mesoderm invagination event module
  • Module contents

Submodules

tyssue.behaviors.event_manager module

Event management module

class tyssue.behaviors.event_manager.EventManager(element=None, logfile=None)

Bases: object

Behavior management class based on two deques, the current and next one.

Creates an events class

Parameters

• element (str) – element on which the events occur, e.g face or cell, optional

• logfile (str, default None) – if logfile is not None, will create a logging handler for this file where each event will be logged

append(behavior, **kwargs)

Add an event to the manager’s next deque

behavior is a function whose signature is ..code :

behavior(sheet, manager, **kwargs)

this function itself might populate the managers next deque

Parameters

• behavior (function) –

• kwargs (dict defaults to {}) – keywords arguments to the behavior function if “face_id” is in the kwargs dictionnary, the face with this id is used.

execute(eptm)

Executes the events present in the self.current deque.

extend(events)

Add a list of events to the next deque

Parameters

events (list of tuples (behavior, [elem_id, args, kwargs])) – the three last elements don’t need to be passed

update()

Replaces self.current by self.next and clears self.next.

tyssue.behaviors.event_manager.wait(eptm, manager, **kwargs)

Does nothing for a number of steps n_steps

Module contents

Behavior and event management module